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• 2002 and before

Scientific publications 2002 and before

• VAN HAMBURG, J.P., SIMONS, G. (2002). AFLP expression analysis: “To Reveal the unknown”.
  BTi: 15-17
  

• VOS, P., STANSSENS. P. (2002). AFLP-based transcript profiling. In: Current Protocols in Molecular Biology, unit 25B.5. (Ausubel, F.M., Brent, R., Kingston , R.E., Moore , D.D., Seidman, J.G. Smith, J.A., Struhl, K.) John Wiley and Sons, New York.
  

• BUNTJER, J.B., OTSEN, M., NIJMAN, I.J., KUIPER, M.T.R., LENSTRA, J.A. (2002). Phylogeny of bovine species based on AFLP fingerprinting.
  Heredity 88: 46-5
  

• MIGNOUNA, J.H.D., MANK, R., ELLIS, N.T.N., VAN DEN BOSCH, N., ASIEDU, R., ABANG, M.M., PELEMAN, J. (2002) A genetic linkage map of water yam (Dioscorea alta L.) based on AFLP markers and QTL analysis for anthracnose resistance.
  Theor Appl. Genet 2002 Oct; 105(5): 726-735
  

• MIGNOUNA, J.H.D., MANK, R., ELLIS, N.T.N., VAN DEN BOSCH, N., ASIEDU, R., NG, S.Y.C., PELEMAN, J. (2002) A genetic linkage map of Guinea yam (Dioscorea rotundata Poir.) based on AFLP markers
  Theor Appl. Genet 2002 Oct; 105(5): 716-725
  

• SRINIVASAN, J., SINZ, W., LANZ, CHR., BRAND, A., NANDAKUMAR, R., RADATZ, G., WITTE, H., KELLER, H., KIPPING, I., PIRES-DASILVA, A., JESSE, T., MILLARE, J., DE BOTH, M., SCHUSTER, S.C., SOMMER, R.J., (2002) A Bacterial artificial chromosome based genetic Linkage Map of the Nematode Pristionchus pacificus
  Genetics 162: 129-134
  

• JANSEN, C., GEERLINGS, H., VAN OEVEREN, A.J., VAN SCHAIK, R.C. (2001) A Comment on Codominant Scoring of AFLP Markers.
  Genetics 158: 925-926
  

• JEUKEN, M., VAN WIJK, R., PELEMAN, J., LINDHOUT, P. (2001) An integrated interspecific AFLP map of lettuce (Lactuca) based on two L.sativa XXL. saligna F2 populations
  Theor Appl. Genet, 103:638-647, 2001
  

• AJMONE MARSAN, P., GORNI, C., CHITTO, A., REDAELLI, R., VAN WIJK, R., STAM, P., MOTTO, M. (2001) Identification of QTLs for grain yield and grain related traits of maize (Zea mays L.) using an AFLP map, different testers, and cofactor analysis.Theor Appl.
  Genet 102: 230-243
  

• BEN CHAIM, A., PARSAN, I. , GRUBE, K.C., JAHN, M., VAN WIJK, R., PELEMAN, J. (2001) QTL mapping of fruit-related traits in pepper (Capsicum annuum).
  Theor Appl Genet 102: 1016-1028
  

• BRADEEN, J.M., STAUB, J.E., WYE, C., ANTONISE, R., PELEMAN, J. (2001) Towards an expanded and integrated linkage map of cucumber (Cucumis sativus L.).
  Genome 44: 111-119

• GEDIL, M.A., WYE, C., BERRY , S., SEGERS, B., PELEMAN, J., JONES, R., LEON , A., SLABAUG, M.B., KNAPP, S.J. (2001)An Integrated RFLP-AFLP linkage Map for cultivated Sunflower
  Genome 44, 2, 213-221
  

• JOHNSON, W.C., JACKSON, L.E., OCHOA, O., VAN WIJK, R., PELEMAN, J., ST.CLAIR, D.A., MICHELMORE, R.W. (2000). Lettuce, a shallow-rooted crop, and lactuca serriola , its wild progenitor, differ at QTL determining root architecture and deep soil water exploitation.
  Theor Appl Genet 101: 1066-1073
  

• ROLDAN-RUIZ, I., CALSYN, E., GILLILAND, T. J., COLL, R., VAN EIJK, M. J. T., and DE LOOSE, M.(2000). Estimating genetic conformity between related ryegrass (Lolium) varieties, 2. AFLP characterization.
  Molecular Breeding 6: 593-602
  

• GILLILAND, T.J., COLL, R., CALSYN, E., DE LOOSE, M., VAN EIJK, M.J.T., and ROLDAN. RUIZ, I. (2000). Estimating genetic conformity between related ryegrass (Lolium) varieties, 1. Morphology and biochemical characterisation.
  Molecular Breeding 6: 569-580.
  

• PARK , Y.H., SENSOY, S., WYE, C., ANTONISE, R., PELEMAN, J., HAVEY, M. (2000). A Genetic Map of Cucumber composed of RAPDs, RFLPs, AFLP markers and Loci Conditioning resistance to Papaya Ringspot and Zucchini Yellow Mosaic Viruses
  Genome 43, 1003-1010
  

• WAMBUTT, R., ........., VOS, P., .........., et al (2000). Progress in Arabidopsis genome sequencing and functional genomics.
  J. Biotechnol. 2000: 78(3): 281-02. PMID: 10751678 (PubMed-indexed for Medline)
  

• MES, J.J., VAN DOORN, A.A., WIJBRANDI, J., SIMONS, G., CORNELISSEN, B.J.C., HARING, M.A. (2000). Expression of the Fusarium resistance gene I-2 colocalizes with the site of fungal containment.
  The Plant Journal 23(2): 183-193
  

• MAYER, K., ......, VOS, P., ......., et al (1999). Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana.
  Nature 402: 769-777
  

• VILLAND J, VAN EEUWIJK FA, LE BUANEC B, KRAMER T, NIENHUIS J, PELEMAN J, STEVENS AM, TANKSLEY S Comparison of molecular marker and morphological data to determine genetic distance among processing tomato varieties.(In: Jondle, B. (ed.) Plant ownership rights - defining an essentially derived variety (EDV).
  ASHS Press.
  

• TAI T, DAHLBECK D, STALL RE, PELEMAN J, STASKAWICZ BJ (1999). High-resolution genetic and physical mapping of the region containing the Bs2 resistance gene of pepper.
  Theor Appl Genet 99: 1201-1206
  

• LIVINGSTONE KD, LACKNEY VK, BLAUTH JR, VAN WIJK R, KYLE JAHN M (1999). Genome Mapping in Capsicum and the Evolution of Genome Stucture in the Solanaceae.
  Genetics 152: 1183-1202.
  

• HAANSTRA JPW, WYE C, VERBAKEL H, MEIJER-DEKENS F, VAN DEN BERG P, ODINOT P, VAN HEUSDEN AW, TANKSLEY S, LINDHOUT P, PELEMAN J (1999). An integrated high-density RFLP-AFLP map of tomato based on two Lycopersicon esculentum X L. pennellii F2 populations.
  Theor Appl Genet 99: 254-271.
  

• CASTIGLIONI P, AJMONE-MARSAN P, VAN WIJK R, MOTTO M (1999). AFLP markers in a molecular linkage map of maize: codominant scoring and linkage group distribution.
  Theor Appl Genet 99: 425-431.
  

• AJMONE MARSAN P, CASTIGLIONI P, FERRARINI M, VAN WIJK R, MOTTO M (1999). Polymorphism, distribution, and segregation of EcoRI and PstI based AFLP markers in a molecular linkage map in maize.
  Maize Genetics Cooperation newsletter 73:13.
  

• VUYLSTEKE, M.; MANK, R.; ANTONISE, R.; BASTIAANS, E.; SENIOR, M.L.; STUBER, C.W.; MELCHINGER, A.E.; LUEBBERSTEDT, T.; XIA, X.C.; STAM, P.; ZABEAU, M.; KUIPER, M. (1999). Two high-density AFLP(r) linkage maps of Zea mays L.: analysis of distribution of AFLP markers.
  Theor Appl Genet. 99:921-935.
  

• MES, J.J.; WESTSTEIJN, E.A.; HERLAAR, F.; LAMBALK, J.J.M.; WIJBRANDI, J.; HARING, M.A.; CORNELISSEN, B.J.C. (1999). Biological and molecular characterization of Fusarium oxysporum f.sp. lycopersici divides race 1 isolates into separate virulence groups.
  Phytopathology 89: 156 - 160.
  

• TERRYN, N., HEIJNEN , L., DE KEYSER, A., VAN ASSELDONK, M., DE CLERCQ, R., VERBAKEL, H., GIELEN, J., ZABEAU, M., VILLARROEL, R., JESSE, T., NEYT, P., HOGERS, R., VAN DEN DAELE, H., ARDILES, W., SCHUELLER, Chr., MAYER, K., DÉHAIS, P., ROMBAUTS, S., VAN MONTAGU, M., ROUZÉ, P., VOS, P. (1999). Evidence for an ancient chromosomal duplication in Arabidopsis thaliana by sequencing and analyzing a 400-kb contig at the APETALA2 locus on chromosome 4.
  FEBS Letters 445(2-3): 237-245.
  

• AJMONE MARSAN, P.; CASTIGLIONI, P.; FUSARI, F.; KUIPER, M.; MOTTO, M. (1998) Genetic diversity and its relationship to hybrid performance in maize as revealed by RFLP and AFLP markers.
  Theor and Appl Genet. 96 (2): 219 - 227
  

• MELCHINGER, A.E.; GUMBER, R.K.; LEIPERT, R.B.; VUYLSTEKE, M.; KUIPER, M. (1998) Prediction of testcross means and variances among F3 progenies of F1 crosses from testcross means and genetic distances of their parents in maize.
  Theorl and Appl Genet 96 (3/4): 503 - 512.
  

• KUIPER, MARTIN T.R. (1998). Building a high-density genetic map using the AFLP technology.
  In: Methods in Molecular Biology 82; Arabidopsis Protocols (J.M. Martinez-Zapater & J. Salinas, eds.). pp. 157-171. Humana Press, Totowa , NJ , USA.
  

• CHO, Y.G.; MCCOUCH, S.R.; KUIPER, M.; KANG, M.R.; POT, J.; GROENEN, J.T.M.; EUN, M.Y. (1998). Integrated map of AFLP, SSLP and RFLP markers using a recombinant inbred population of rice (Oryza sativa L.)
  Theor and Appl Genet 97 (3): 370 - 380.
  

• VOS, P., SIMONS, G., JESSE, T., WYBRANDI, J., HEINEN, L., HOGERS, R., FRIJTERS, A., GROENENDIJK, J., DIERGAARDE, P., REIJANS, M., FIERENS-ONSTENK, J., DE BOTH, M., PELEMAN, J., LIHARSKA, T., HONTELEZ, J. & ZABEAU M. (1998) The tomato Mi-1 gene confers resistance to both root-knot nematodes and potato aphids.
  Nature Biotechnology 16 (13): 1365 - 1369.
  

• SIMONS, G.; GROENENDIJK, J.; WIJBRANDI, J.; REIJANS, M.; GROENEN, J.; DIERGAARDE, P.; LEE, Th. van der; BLEEKER, M.; ONSTENK, J.; BOTH, M. de; HARING, M.; MES, J.; CORNELISSEN, B.; ZABEAU, M. & VOS, P. (1998). Dissection of the Fusarium I2 gene cluster in tomato reveals six homologs and one active gene copy.
  The Plant Cell 10: 1055-1068.
  

• KALOSHIAN, I.; YAGHOOBI, J.; LIHARSKA, T.; HONTELEZ, J.; HANSON, D.; HOGAN, P.; JESSE, T.; WIJBRANDI, J.; SIMONS, G.; VOS, P.; ZABEL, P.; & WILLIAMSON, V.M. (1998). Genetic and physical localization of the root-knot nematode resistance locus Mi in tomato.
  Molecular & General Genetics 257: 376-385.
  

• VOS, P. (1998). AFLP fingerprinting of Arabidopsis. In: Methods in Molecular Biology 82; Arabidopsis Protocols (J.M. Martinez-Zapater & J. Salinas, eds.). pp. 137-146. Humana Press, Totowa , NJ , USA.
  

• VOS, P. & KUIPER, M. (1998). AFLP analysis.
  In: DNA markers, protocols, applications and overviews (G. Caetano-Arnolles & P.H. Gresshoff, eds.) pp 115-131. John Wiley & Sons, New York.
  

• ALONSO-BLANCO, C.; PEETERS, A.J.M.; KOORNNEEF, M.(1); LISTER, C.; DEAN, C.; BOSCH van den, N.; POT, JERINA; KUIPER, MARTIN T.R. (1998). Development of an AFLP based linkage map of Ler , Col and Cvi Arabidopsis thaliana ecotypes and construction of a Ler/Cvi recombinant inbred line population.
  The Plant Journal 14 (2): 259 - 271.
  

• VUYLSTEKE, M., KUIPER, M., STAM, P. (1999). Chromosomal regions involved in hybrid performance and heterosis; their AFLP^®-based identification and practical use in prediction models.
  Heredity. 85, 208-218
  

• WITSENBOER, H., VOGEL, J., MICHELMORE, R.W. Identification, genetic localization, and allelic diversity of selectively amplified microsatellite polymorphic loci in lettuce and wild relatives ( Lactuca spp.) (1997)
  Genome, 40: 923-936
  

• FRIJTERS, A.C.J.; ZHANG, Z.; DAMME van, M.; WANG, G.-L.; RONALD, P.C.; MICHELMORE, R.W. (1997). Constr uction of a bacterial artificial chromosome library containing large EcoRI and HindIII genomic fragments of lettuce.
  Theor and Appl Genet 94: 390 -399.
  

• OSBORN, T.C.; KOLE, C.; PARKIN, I.A.; SHARPE, A.G.; KUIPER, M.; LYDIATE, D.J.; TRICK, M. (1997) Comparison of flowering time genes in Brassica rapa, B. napus and Arabidopsis thaliana.
  Genetics 146 (3): 1123 - 1129.  

• TRIANTAPHYLLIDIS GV, CRIEL GRJ, ABATZOPOULOS TJ, THOMAS KM, PELEMAN J, BEARDMORE JA, SORGELOOS P (1997). International Study on Artemia. LVII. Morphological and molecular characters suggest conspecificity of all bisexual European and North African Artemia populations.
  Marine Biology 129: 477-487.
  

• AJMONE-MARSAN, P.; VALENTINI, A.; CASSANDRO, M.; VECCHIOTTI-ANTALDI, G.; BERTONI, G.; KUIPER, M. (1997). AFLP markers for DNA fingerprinting in cattle.
  Animal Genetics 28 (6): 418 - 426.
  

• RYALS, J.; WEYMANN, K.; LAWTON, K.; FRIEDRICH, L.; ELLIS, D.; STEINER, H.-Y.; JOHNSON, J.; DELANEY, T.P.; JESSE, T.; VOS, P. & UKNES, S. (1997). The Arabidopsis NIM1 protein shows homology to the mammalian transcription factor inhibitor IKB.
  The Plant Cell 9: 425-439.
  

• BÜSCHGES, R.; HOLLRICHER, K.; PANSTRUGA, R.; SIMONS, G.; WOLTER, M.; FRIJTERS, A.; DAELEN, R. van; LEE, Th. van der; DIERGAARDE, P.; GROENENDIJK, J.; TÖPSCH, S.; VOS, P.; SALAMINI, F. & SCHULZE-LEFERT, P. (1997). The barley Mlo gene: a novel control element of plant pathogen resistance.
  Cell 88: 695-705.  

• SIMONS, G.; LEE, Th. van der; DIERGAARDE, P.; DAELEN, R. van; GROENENDIJK, J.; FRIJTERS, A.; BÜSCHGES, R.; HOLLRICHER, K.; TÖPSCH, S.; SCHULZE-LEFERT, P.; SALAMINI, F.; ZABEAU, M. & VOS, P. (1997). AFLP-based fine mapping of the Mlo gene to a 30-kb DNA segment of the barley genome.
  Genomics 44 (1): 61-70.
  

• CERVERA MT, GUSMAO J, STEENACKERS M, PELEMAN J, STORME V, VANDEN BROECK A, VAN MONTAGU M, BOERJAN W (1996). Identification of AFLP molecular markers for resistance in Populus against Melampsora larici-populins.
  Theor Appl Genet 93: 733-737.  

• OTSEN, M. (1); DEN BIEMAN, M.: KUIPER, MARTIN T.R.; PRAVENEC, M.; KREN, V.; KURTZ, THEODORE W.; JACOB, HOWARD J.; LANKHORST, A.; ZUTPHEN Van, BERT. F.M. (1996). Use of AFLP markers for gene mapping and QTL detection in the rat.
  Genomics, 37 (3): 289 - 294.
  

• BACHEM, C.W.B.; HOEVEN van der, R.S.; BRUIJN de, S.M.; VREUGDENHIL, D.; ZABEAU, M.; VISSER, R.G.F. (1996). Visualization of differential gene expression using a novel method of RNA fingerprinting based on AFLP: Analysis of gene expression during potato tuber development.
  The Plant Journal 9: 745 - 753.

• HILL, M.; WITSENBOER, H.; ZABEAU, M.; VOS, P.; KESSELI, R. & MICHELMORE, R. (1996). PCR-based fingerprinting using AFLPs as a tool for studying genetic-relationships in Lactuca spp.
  Theor and Appl Genet 93 (8): 1202-1210.  

• MAJER, D.; MITHEN, R.; LEWIS, B.G.; VOS, P. & OLIVER, R.P. (1996). The use of AFLP fingerprinting for the detection of genetic-variation in fungi.
  Mycological Research 100 (9): 1107-1111.
  

• JANSSEN, P.; COOPMAN, R.; HUYS, G.; SWINGS, J.; BLEEKER, M.; VOS, P.; ZABEAU, M. & KERSTERS, K. (1996). Evaluation of the DNA-fingerprinting method of AFLP as a new tool in bacterial taxonomy.
  Microbiology 142 (7): 1881-1893.
  

• BECKER, J.; VOS, P.; KUIPER, M.; SALAMINI, F. & HEUN, M. (1995). Combined mapping of AFLP and RFLP markers in barley. Molecular & General
  Genetics 249: 65-73
  

• MEKSEM K, LEISTER D, PELEMAN J, ZABEAU M, SALAMINI F, GEBHARDT C (1995) A high-resolution map of the vicinity of the R1 locus on chromosome V of potato based on RFLP and AFLP markers.
  Mol Gen Genet 249: 74-81.
  

• VAN ECK HJ, ROUPPE VAN DER VOORT J, DRAAISTRA J, VAN ZANDVOORT P, VAN ENCKEVORT E, SEGERS B, PELEMAN J, JACOBSEN E, HELDER J, BAKKER J (1995) The inheritance and chromosomal localisation of AFLP markers in a non-inbred potato offspring.
  Molecular Breeding 1: 397-410
  

• THOMAS, C.M.; VOS, P.; ZABEAU, M.; JONES, D.A.; NORCOTT, K.A.; CHADWICK, B.P. & JONES, J.D.G. (1995). Identification of amplified restriction fragment polymorphism (AFLP) markers tightly linked to the tomato Cf-9 gene for resistance to Cladosporium fulvum.
  The Plant Journal 8(5): 785-794.
  

• VOS, P.; HOGERS, R.; BLEEKER, M.; REIJANS, M.; LEE, Th. van der; HORNES, M.; FRIJTERS, A.; POT, J.; PELEMAN, J.; KUIPER, M. & ZABEAU, M. (1995). AFLP: a new technique for DNA fingerprinting.
  Nucleic Acids Research 23(21): 4407-4414.
  

• SMITH S, LUK S, SOBRAL B, MUHAWISH S, PELEMAN J, ZABEAU M (1994). Associations among inbred lines of maize using RFLP and DNA amplification technologies (AFLP and AP-PCR), and correlations with pedigree, F1 yield and heterosis.
  Maize Genetics Cooperation Newsletter 68: 45.
  

• BACHEM, C.W.B.; SPECKMANN, G.-J.; LINDE van der, P.C.G.; VERHEGGEN, F.T.M.; HUNT, M.D.; STEFFENS, J.C.; ZABEAU, M. (1994). Antisense expression of polyphenol oxidase genes inhibits enzymatic browning in potato tubers.
  Bio/Technology 12 (11): 1101-1105.
  

• WIJBRANDI, J.; BOTH de, M.T.J. (1993). Temperate vegetable crops.
  Scientia Horticulturae 55: 37-63.

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Mark J.J. van Haaren

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Herco van Liere

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